=============== Plugin coverage =============== Getting coverage on pytest plugins is a very particular situation. Because of how pytest implements plugins (using setuptools entrypoints) it doesn't allow controlling the order in which the plugins load. See `pytest/issues/935 `_ for technical details. The current way of dealing with this problem is using the append feature and manually starting ``pytest-cov``'s engine, eg:: COV_CORE_SOURCE=src COV_CORE_CONFIG=.coveragerc COV_CORE_DATAFILE=.coverage.eager pytest --cov=src --cov-append Alternatively you can have this in ``tox.ini`` (if you're using `Tox `_ of course):: [testenv] setenv = COV_CORE_SOURCE= COV_CORE_CONFIG={toxinidir}/.coveragerc COV_CORE_DATAFILE={toxinidir}/.coverage And in ``pytest.ini`` / ``tox.ini`` / ``setup.cfg``:: [tool:pytest] addopts = --cov --cov-append